diff --git a/sqlFunctions.R b/sqlFunctions.R index 7de8bb2..52235c3 100644 --- a/sqlFunctions.R +++ b/sqlFunctions.R @@ -167,13 +167,13 @@ sqlWriteTemp<-function(conn=dta, nhcs=nhc.test, file="queryOV.xlsx", samples.mod if (today==TRUE){ cnag.exp$FECHA_ENVIO<-format(Sys.Date(), "%d/%m/%y") } - }else{cnag.exp<-NULL} + }else{cnag.exp<-sqlFetch(dta, "CNAG") %>% slice(0)} if (any(sapply(nhc.table$Samples, function(x) "rna" %in% strsplit(x,",")[[1]]) == T)){ nhcs.rna<-nhc.table[sapply(nhc.table$Samples, function(x) "rna" %in% strsplit(x,",")[[1]]),"NHC"] umid.rna<-sqlFetch(conn, "UMID") %>% filter(NHC %in% nhcs.rna) %>% pull(UMID) sample.rna<-samples.exp %>% filter(UMID %in% umid.rna) %>% pull(CODIGO) rna.exp<-merge(data.frame("UMID"=umid.rna, "CODIGO"=sample.rna), sqlFetch(dta, "RNADNA") %>% slice(0), all=T) - }else{rna.exp<-NULL} + }else{rna.exp<- sqlFetch(dta, "RNADNA") %>% slice(0)} if (clinics.mod){ ## Importar los datos clĂ­nicos de pacientes existentes y generar nueva entrada par los nuevos upd.clinics<-sqlFetch(conn, "CLINICOS")