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Añadir la sincronización de tablas para CC.

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Costa
2022-03-22 14:25:17 +01:00
parent ffdf64d736
commit 5ea3b493f4
1 changed files with 71 additions and 0 deletions
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BDAccess/app.R
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@@ -520,6 +520,77 @@ server <- function(input, output) {
sqlSave(dta, clinics.new, tablename="CLINICS", append = T, varTypes = varTypes, rownames = F)
print("Tabla CLINICS sincronizada.")
}
if (input$dbtype %in% c("CC")){
## Nuevas entradas en MUESTRAS
nsamples<-values[["samples"]] %>% nrow
upd.samples<-values[["samples"]]
if (nrow(upd.samples) > 0){rownames(upd.samples)<-(nsamples+1):(nsamples+nrow(upd.samples)) %>% as.character}
if (nrow(upd.samples) > 0){
upd.samples$FECHA_RECEPCION<-lubridate::parse_date_time(upd.samples$FECHA_RECEPCION, c("d/m/Y","d/m/y")) %>% as.Date()
upd.samples$TIPO<-as.character(upd.samples$TIPO)
upd.samples$OBS<-as.character(upd.samples$OBS)
### !! Atención, esto cambia la base de datos:
sqlSave(dta, upd.samples, tablename="MUESTRAS", append = T, varTypes = c("FECHA_RECEPCION"="Date"), rownames = F)
print("Tabla MUESTRAS sincronizada.")
}
## Entradas modificadas en CLINICOS
upd.clinics<-values[["CLINICS"]]
PATID.mod<-upd.clinics$PATID[upd.clinics$PATID %in% (sqlFetch(dta, "CLINICOS") %>% pull(PATID))]
rnames<-sqlFetch(dta, "CLINICOS") %>% filter(PATID %in% PATID.mod) %>% rownames
clinics.mod<-upd.clinics %>% filter(PATID %in% PATID.mod) %>% select(-NHC)
rownames(clinics.mod)<-rnames
### !! Atención, esto cambia la base de datos:
fechas<-colnames(clinics.mod)[grepl("date|MET_DX|DoB", colnames(clinics.mod), ignore.case = T)]
for (i in fechas){
clinics.mod[,i]<-lubridate::parse_date_time(clinics.mod[,i], c("d/m/Y","d/m/y")) %>% as.Date()
}
sqlUpdate(dta, clinics.mod,"CLINICOS", index="PATID")
print("Tabla CLINICOS modificada.")
## Nuevas entradas en CLINICOS
nsamples.clin<-sqlFetch(dta, "CLINICOS") %>% nrow
PATID.new<-upd.clinics$PATID[!upd.clinics$PATID %in% (sqlFetch(dta, "CLINICOS") %>% pull(PATID))]
clinics.new<-upd.clinics %>% filter(PATID %in% PATID.new) %>% select(-NHC)
if (length(PATID.new) > 0){rownames(clinics.new)<-(nsamples.clin+1):(nsamples.clin+nrow(clinics.new)) %>% as.character}
### !! Atención, esto cambia la base de datos:
fechas<-colnames(clinics.new)[grepl("date|MET_DX|DoB", colnames(clinics.new), ignore.case = T)]
varTypes<-rep("Date",length(fechas))
names(varTypes)<-fechas
for (i in fechas){
clinics.new[,i]<-lubridate::parse_date_time(clinics.new[,i], c("d/m/Y","d/m/y","Y-m-d")) %>% as.Date()
}
sqlSave(dta, clinics.new, tablename="CLINICOS", append = T, varTypes = varTypes, rownames = F)
print("Tabla CLINICOS sincronizada.")
## Nuevas entradas en CNAG
if (nrow(values[["cnag"]]) > 0){
cnag.sync<-values[["cnag"]]
fechas<-colnames(cnag.sync)[sqlFetch(dta, "CNAG") %>% sapply(lubridate::is.POSIXct)]
varTypes<-rep("Date",length(fechas))
names(varTypes)<-fechas
print(fechas)
for (i in fechas){
cnag.sync[,i]<-lubridate::parse_date_time(cnag.sync[,i], c("d/m/Y","d/m/y","Y-m-d")) %>% as.Date()
}
sqlSave(dta, cnag.sync, tablename="CNAG", append = T, varTypes = varTypes, rownames = F)
}
## Nuevas entradas en RNADNA
if (nrow(values[["rna"]]) > 0){
rna.sync<-values[["rna"]]
fechas<-colnames(rna.sync)[sqlFetch(dta, "RNADNA") %>% sapply(lubridate::is.POSIXct)]
varTypes<-rep("Date",length(fechas))
names(varTypes)<-fechas
for (i in fechas){
rna.sync[,i]<-lubridate::parse_date_time(rna.sync[,i], c("d/m/Y","d/m/y","Y-m-d")) %>% as.Date()
}
sqlSave(dta, rna.sync, tablename="RNADNA", append = T, varTypes = varTypes, rownames = F)
}
}
})
## Visor