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dbb8e1ed0d
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| dbb8e1ed0d | |||
| e6c2a32ddb | |||
| 51acdd0ece | |||
| dcbf4f8b9d |
+7
-9
@@ -1,17 +1,15 @@
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library(shiny)
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library(shiny)
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library(rhandsontable)
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library(rhandsontable)
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library(tidyverse)
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library(reshape2)
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library(Matrix)
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library(CitFuns)
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library(BDCIT)
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library(openCyto)
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library(openCyto)
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library(flowCore)
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library(flowCore)
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library(flowWorkspace)
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library(flowWorkspace)
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library(CytoML)
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library(CytoML)
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library(ggcyto)
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library(ggcyto)
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library(reshape2)
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filter<-dplyr::filter
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library(Matrix)
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library(CitFuns)
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library(BDCIT)
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library(tidyverse)
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print(getwd())
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print(getwd())
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source("../sqlFunctions.R", encoding = "UTF-8")
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source("../sqlFunctions.R", encoding = "UTF-8")
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@@ -1027,8 +1025,8 @@ server <- function(input, output) {
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for (id in names){
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for (id in names){
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print(id)
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print(id)
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iso<-sampleNames(gs)[grepl(id, sampleNames(gs)) & grepl("iso",sampleNames(gs))]
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iso<-sampleNames(gs)[grepl(id, sampleNames(gs)) & grepl("iso|Iso|ISO",sampleNames(gs))]
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ab<-sampleNames(gs)[grepl(id, sampleNames(gs)) & grepl("ab",sampleNames(gs))]
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ab<-sampleNames(gs)[grepl(id, sampleNames(gs)) & grepl("ab|Ab|AB",sampleNames(gs))]
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g1<-ggcyto_arrange(autoplot(gs[[ab]], nodes_parent, bins=128), nrow=1)
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g1<-ggcyto_arrange(autoplot(gs[[ab]], nodes_parent, bins=128), nrow=1)
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g2<-ggcyto_arrange(autoplot(gs[[iso]], nodes_cd8, bins=64), nrow=1)
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g2<-ggcyto_arrange(autoplot(gs[[iso]], nodes_cd8, bins=64), nrow=1)
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