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Añadiendo la opción de excluir del agrupamiento.

main
Marcel Costa 2 years ago
parent
commit
0b6f3b80d1
2 changed files with 5 additions and 5 deletions
  1. +3
    -4
      R/ggheatmap.R
  2. +2
    -1
      man/ggheatmap.Rd

+ 3
- 4
R/ggheatmap.R

@ -5,10 +5,10 @@ ggheatmap<-function(df, x=NULL, y=NULL, value=NULL, grouping="mean", exclude_gro
df<-rename(df, "VarX"=all_of(x), "VarY"=all_of(y), "Value"=all_of(value))
if (!is.null(exclude_group)){
if (is.null(exclude_group)){
df<-df %>% group_by(VarX,VarY)
}else{
df<-df %>% group_by(VarX,VarY,all_of(exclude_group))
df<-df %>% group_by_("VarX","VarY",exclude_group) #%>% rename(exclude_group="all_of(exclude_group)")
}
if (grouping == "mean"){
df<-df %>% summarise(Value=mean(Value)) %>% ungroup
@ -16,8 +16,7 @@ ggheatmap<-function(df, x=NULL, y=NULL, value=NULL, grouping="mean", exclude_gro
if (grouping == "median"){
df<-df %>% summarise(Value=median(Value)) %>% ungroup
}
order<-clustsort(df %>% spread(VarY,Value) %>% as.data.frame)
order<-clustsort(df %>% spread(VarY,Value) %>% select(!all_of(exclude_group)) %>% as.data.frame)
df$VarX<-factor(df$VarX, levels=order$x)
df$VarY<-factor(df$VarY, levels=order$y)

+ 2
- 1
man/ggheatmap.Rd

@ -2,7 +2,7 @@
\alias{ggheatmap}
\title{ggheatmap}
\usage{
ggheatmap(df, x=NULL, y=NULL, value=NULL, grouping="mean")
ggheatmap(df, x=NULL, y=NULL, value=NULL, grouping="mean", exclude_group=NULL)
}
\arguments{
\item{df}{A data frame in "long" format.}
@ -10,6 +10,7 @@ ggheatmap(df, x=NULL, y=NULL, value=NULL, grouping="mean")
\item{y}{The variable that will be used for Y axis in the heatmap. If not specified, the second column will be used.}
\item{value}{The variable that will be used for colouring the heatmap. If not specified, the third column will be used.}
\item{grouping}{The function that will be used to group if there is more than one observation for each X-Y combination. "mean" or "median" are posible, defaulting to "mean".}
\item{exclude_group}{If you want to exclude columns from grouping, you can introduce a character vector here. Useful if you want to facet the plot.}
}
\description{
Generates a heatmap using ggplot for a dataframe.

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