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\name{gglegend} |
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\alias{gglegend} |
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\title{gglegend} |
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\usage{ |
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gglegend(data, x, y, var, stat="median", color="black", ...) |
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} |
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\arguments{ |
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\item{data}{A data frame from where to take x and y axis, and the grouping variable.} |
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\item{x}{The variable that will be used for X axis in the heatmap.} |
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\item{y}{The variable that will be used for Y axis in the heatmap.} |
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\item{value}{The variable that will be used for grouping the heatmap. The labels will be taken from it} |
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\item{stat}{The statistical central test that will be used to calculate the label coordinates. "mean" or "median" are posible, defaulting to "median".} |
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\item{color}{The color of the labels, "black" by default. If NULL, nothig will be passed to the geom_label so it may be taken from aesthetics.} |
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\item{...}{Other arguments that will be passed to the geom_label function.} |
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} |
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\description{ |
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Generates a geom_label object with labels in the center of each population or agrupation. |
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} |
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\examples{ |
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library(tidyverse) |
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library(Rtsne) |
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library(Rphenograph) |
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library(igraph) |
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## We will generate an example using tSNE and Phenograph algorithms, but can be applied to any other situation. |
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iris_unique <- unique(iris) # Remove duplicates |
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iris_matrix <- as.matrix(iris_unique[,1:4]) |
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# Set a seed if you want reproducible results |
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set.seed(42) |
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tsne_out <- Rtsne(iris_matrix,pca=FALSE,perplexity=30,theta=0.0) # Run TSNE |
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rpheno<-Rphenograph(tsne_out$Y) |
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df<-data.frame(as.data.frame(tsne_out$Y), "Clust"=factor(membership(rpheno[[2]]))) |
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head(df) |
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ggplot(df, aes(V1,V2, color=Clust))+ |
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geom_point()+ |
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gglegend(df, V1, V2, Clust)+ |
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guides(color="none") |
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} |