Añadida función ggcorrplot.

This commit is contained in:
Costa
2022-02-04 13:58:17 +01:00
parent ece3a80215
commit 7d03719bf3
+18
View File
@@ -0,0 +1,18 @@
ggcorrplot<-function(df, var){
m.df<-df %>% spread(Cyt, Value) %>% select(-pats)
mcor<-cor(m.df, m.df, use="pairwise.complete.obs") # Por defecto usa el método de Pearson.
mpval<-Hmisc::rcorr(as.matrix(m.df))$P
df<-mcor %>% as.data.frame() %>% add_column(Var1=rownames(mcor),.before=1) %>%
gather(Var2, Value, -Var1)
df.pval<-mpval %>% as.data.frame() %>% add_column(Var1=rownames(mpval),.before=1) %>%
gather(Var2, Value, -Var1)
order<- mcor %>% as.data.frame() %>% add_column(Var1=rownames(mcor),.before=1) %>% clustsort
ggplot(df, aes(Var1, Var2, fill=Value))+
scale_x_discrete(limits=order$x)+
scale_y_discrete(limits=order$y)+
theme_heatmap(line.color="black")+
geom_text(data=df.pval, aes(label=round(Value, 2)))
}