ggcorrplot<-function(df, var, color="#FFFFFF00", stat="signif", tri="all", method="pearson"){ m.df<-df %>% spread(Cyt, Value) %>% select(-pats) mcor<-cor(m.df, m.df, use="pairwise.complete.obs", method = method) # Por defecto usa el método de Pearson. mpval<-Hmisc::rcorr(as.matrix(m.df), type=method)$P order<- mcor %>% as.data.frame() %>% add_column(Var1=rownames(mcor),.before=1) %>% clustsort mcor<-mcor[order$y, order$x] mpval<-mpval[order$y, order$x] df<-mcor %>% as.data.frame() if (tri == "upper"){ df[lower.tri(df, diag=F)]<-NA } if (tri == "lower"){ df[upper.tri(df, diag=F)]<-NA } df<-df %>% add_column(Var1=rownames(mcor),.before=1) %>% gather(Var2, Value, -Var1) %>% filter(!is.na(Value)) df.pval<-mpval %>% as.data.frame() if (tri == "upper"){ df.pval[lower.tri(df.pval, diag=F)]<-NA } if (tri == "lower"){ df.pval[upper.tri(df.pval, diag=F)]<-NA } df.pval<-df.pval %>% add_column(Var1=rownames(mpval),.before=1) %>% gather(Var2, Value, -Var1) %>% filter(!is.na(Value)) df.pval$Value<-round(df.pval$Value, 3) if (!stat %in% c("signif","none","pval")){stat<-"signif"} if (stat=="signif"){ df.pval$Value<-gtools::stars.pval(df.pval$Value) } if (stat=="none"){ df.pval$Value<-"" } df$Var1<-factor(df$Var1, levels=order$x) df$Var2<-factor(df$Var2, levels=order$y) ggplot(df, aes(Var1, Var2))+ geom_tile(aes(fill=Value), color=color)+ geom_text(data=df.pval, aes(label=Value), color="white")+ scale_fill_gradientn(colors=col2(200))+ theme(axis.text.x = element_text(angle = 90, hjust = 1, vjust=0.5), panel.background = element_blank(), axis.ticks = element_blank()) }