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@ -131,14 +131,21 @@ server <- function(input, output) { |
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t_maps<-generate_labstats(t_stats, t, "value", "variable", "Groups") |
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t_maps<-generate_labstats(t_stats, t, "value", "variable", "Groups") |
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dades$maps<<-t_maps |
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dades$maps<<-t_maps |
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} |
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} |
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print(t_substr) |
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if (length(unique(dades$taula[,"Groups"])) < 2){ |
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dades$stats<<-1 |
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} |
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dades$final<<-if(ctrl %in% colnames(t_substr)){t_substr %>% select(-cctrl)}else{t_substr} |
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# dades$final<<-if(ctrl %in% colnames(t_substr)){t_substr %>% select(-c(ctrl, mock))}else{t_substr %>% select(-mock)} |
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c(ctrl, mock)[c(ctrl, mock) %in% colnames(t_substr)] |
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dades$final<<-t_substr %>% select(-c(ctrl, mock)[c(ctrl, mock) %in% colnames(t_substr)]) |
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set.seed(123) |
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set.seed(123) |
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if (input$positive == T){ |
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if (input$positive == T){ |
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ggplot(melt(t_substr, id=c("Mice", ctrl, "Groups")), aes(variable, value))+ |
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ids=c("Mice", "Groups", c(ctrl, mock)[c(ctrl, mock) %in% colnames(t_substr)]) |
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validate( |
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need(exists("mock_mean"), "No se puede elegir positividad con múltiples mocks") |
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) |
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if (exists("mock_mean")){ |
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ggplot(melt(t_substr, id=ids), aes(variable, value))+ |
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labs(x="", y="Spots/2.5*10^5 cells")+ |
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labs(x="", y="Spots/2.5*10^5 cells")+ |
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# geom_errorbar(stat="summary", position=position_dodge(width=0.9), width=0.5, aes(fill=Groups))+ |
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# geom_errorbar(stat="summary", position=position_dodge(width=0.9), width=0.5, aes(fill=Groups))+ |
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geom_hline(data=mock_mean, aes(color=Groups, yintercept = `.`))+ |
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geom_hline(data=mock_mean, aes(color=Groups, yintercept = `.`))+ |
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@ -151,8 +158,10 @@ server <- function(input, output) { |
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geom_text(data=t_stats, aes(t_maps$label$x, t_maps$label$y, label=p.signif), color="black")+ |
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geom_text(data=t_stats, aes(t_maps$label$x, t_maps$label$y, label=p.signif), color="black")+ |
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theme_bw()+ |
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theme_bw()+ |
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theme(axis.text.x=element_text(angle=45, hjust=1)) |
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theme(axis.text.x=element_text(angle=45, hjust=1)) |
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} |
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}else{ |
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}else{ |
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ids<-if(ctrl %in% colnames(t_substr)){c("Mice", ctrl, "Groups")}else{c("Mice", "Groups")} |
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ids=c("Mice", "Groups", c(ctrl, mock)[c(ctrl, mock) %in% colnames(t_substr)]) |
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ggplot(melt(t_substr, id=ids), aes(variable, value))+ |
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ggplot(melt(t_substr, id=ids), aes(variable, value))+ |
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labs(x="", y="Spots/2.5*10^5 cells")+ |
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labs(x="", y="Spots/2.5*10^5 cells")+ |
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# geom_errorbar(stat="summary", position=position_dodge(width=0.9), width=0.5, aes(fill=Groups))+ |
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# geom_errorbar(stat="summary", position=position_dodge(width=0.9), width=0.5, aes(fill=Groups))+ |
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@ -174,16 +183,22 @@ server <- function(input, output) { |
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observeEvent(dades$stats, {}) |
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observeEvent(dades$stats, {}) |
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t_stats<-dades$stats |
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t_stats<-dades$stats |
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if (!is.null(dades$stats)){ |
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if (!is.null(dades$stats)){ |
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return( |
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t_stats %>% |
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flextable() %>% |
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theme_vanilla() %>% |
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fontsize(size=14, part="all") %>% |
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padding(padding=10, part="all") %>% |
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color(~ p.adj < 0.05, color = "red")%>% |
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autofit() |
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) %>% |
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htmltools_value() |
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if (t_stats == 1){ |
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validate( |
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need(t_stats == 1, "Con un sólo grupo no se puede hacer estadística") |
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) |
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}else{ |
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return( |
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t_stats %>% |
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flextable() %>% |
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theme_vanilla() %>% |
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fontsize(size=14, part="all") %>% |
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padding(padding=10, part="all") %>% |
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color(~ p.adj < 0.05, color = "red")%>% |
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autofit() |
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) %>% |
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htmltools_value() |
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} |
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} |
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} |
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}) |
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}) |
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