From be87a321a4cadb9acd7d761bcd9b052aadcad51d Mon Sep 17 00:00:00 2001
From: marcelcosta <marcelcosta@mcosta.cat>
Date: Thu, 23 Oct 2025 11:39:59 +0200
Subject: [PATCH] Virus-CellLine-transform script

---
 Virus-CellLine-transform.R | 132 +++++++++++++++++++++++++++++++++++++
 1 file changed, 132 insertions(+)
 create mode 100644 Virus-CellLine-transform.R

diff --git a/Virus-CellLine-transform.R b/Virus-CellLine-transform.R
new file mode 100644
index 0000000..30d0c7a
--- /dev/null
+++ b/Virus-CellLine-transform.R
@@ -0,0 +1,132 @@
+library(readxl)
+library(tidyverse)
+library(openxlsx)
+
+old.table<-as.data.frame(read_excel("Nitrogen_Virus_transform.xlsx"))
+old.table[grepl("^[0-9]*$", old.table$Passage),"Passage"]<-as.character(as.Date(as.numeric(old.table[grepl("^[0-9]*$", old.table$Passage),"Passage"]), origin = "1899-12-30"))
+
+table.list<-old.table %>%
+  group_by(Caja) %>% 
+  group_split()
+names(table.list)<-unique(old.table$Caja)
+names(table.list)
+
+caja_order.df<-data.frame(
+  caja=names(table.list),
+  Rack=gsub(" #[0-9]*$","",names(table.list)),
+  ncaja=as.numeric(gsub("[A-Z]*-[0-9]* #","",names(table.list)))
+)
+caja_order<-caja_order.df %>% arrange(Rack, ncaja) %>% pull(caja)
+table.list<-table.list[caja_order]
+
+View(table.list[[1]])
+
+caja.list<-list()
+for (i in names(table.list)){
+  m0<-matrix(nrow = 30, ncol=10, byrow = T)
+  m0[seq(from=1, to=30, by=3),]<-matrix(data=pull(table.list[[i]],Cell.line), nrow = 10, ncol=10, byrow = T)
+  m0[seq(from=2, to=30, by=3),]<-matrix(data=pull(table.list[[i]],Info.Descongelacion), nrow = 10, ncol=10, byrow = T)
+  m0[seq(from=3, to=30, by=3),]<-matrix(data=pull(table.list[[i]],Passage), nrow = 10, ncol=10, byrow = T)
+  caja.list[[i]]<-m0
+}
+
+wb <- openxlsx::createWorkbook()
+
+for (i in names(caja.list)){
+
+  addWorksheet(
+    wb = wb,
+    sheetName = i
+  )
+  
+  rangeRows<-1:30
+  rangeCols<-1:10
+  
+  ## left borders
+  openxlsx::addStyle(
+    wb = wb,
+    sheet = i,
+    style = openxlsx::createStyle(
+      border = c("left"),
+      borderStyle = c("thick")
+    ),
+    rows = rangeRows,
+    cols = rangeCols[1],
+    stack = TRUE,
+    gridExpand = TRUE
+  )
+  
+  ##right borders
+  openxlsx::addStyle(
+    wb = wb,
+    sheet = i,
+    style = openxlsx::createStyle(
+      border = c("right"),
+      borderStyle = c("thick")
+    ),
+    rows = rangeRows,
+    cols = tail(rangeCols, 1),
+    stack = TRUE,
+    gridExpand = TRUE
+  )
+  
+  ## top borders
+  openxlsx::addStyle(
+    wb = wb,
+    sheet = i,
+    style = openxlsx::createStyle(
+      border = c("top"),
+      borderStyle = c("thick")
+    ),
+    rows = rangeRows[1],
+    cols = rangeCols,
+    stack = TRUE,
+    gridExpand = TRUE
+  )
+  
+  ##bottom borders
+  openxlsx::addStyle(
+    wb = wb,
+    sheet = i,
+    style = openxlsx::createStyle(
+      border = c("bottom"),
+      borderStyle = c("thick")
+    ),
+    rows = tail(rangeRows, 1),
+    cols = rangeCols,
+    stack = TRUE,
+    gridExpand = TRUE
+  )
+  
+  ##row cells
+  openxlsx::addStyle(
+    wb = wb,
+    sheet = i,
+    style = openxlsx::createStyle(
+      border = c("bottom"),
+      borderStyle = c("thin")
+    ),
+    rows = seq(from=3, to=27, by=3),
+    cols = rangeCols,
+    stack = TRUE,
+    gridExpand = TRUE
+  )
+  
+  ##column cells
+  openxlsx::addStyle(
+    wb = wb,
+    sheet = i,
+    style = openxlsx::createStyle(
+      border = c("right"),
+      borderStyle = c("thin")
+    ),
+    rows = 1:30,
+    cols = 1:9,
+    stack = TRUE,
+    gridExpand = TRUE
+  )
+  
+  writeData(wb, sheet=i, x=caja.list[[i]], colNames = FALSE)
+}
+
+saveWorkbook(wb, "Nitrogen_Virus.xlsx", overwrite = TRUE)