diff --git a/invivos/app.R b/invivos/app.R index 820db34..d614c87 100755 --- a/invivos/app.R +++ b/invivos/app.R @@ -521,7 +521,7 @@ server <- function(input, output) { tableR<-filter(table, `ID tumor` == side) %>% filter(!is.na(Volume)) endtime<-dcast(tableR %>% filter(Volume < cutoff), Cage+`ID animal`+`ID tumor`+Group~., value.var = "Timepoint", fun.aggregate = function(x){max(as.numeric(as.character(x)))}) %>% rename("end"=".") endtime["Dead"]<-dcast(tableR, Cage+`ID animal`+`ID tumor`+Group~., value.var = "Volume", fun.aggregate = function(x){max(as.numeric(as.character(x)))}) %>% pull(".") > input$cutoff - table_tumor<<-endtime + table_tumor<-endtime if (input$colors != ""){ col<-input$colors }else{ @@ -544,6 +544,10 @@ server <- function(input, output) { }else{ col<-gg_color_hue(length(unique(table_tumor$Group))) } + tableR<-table %>% filter(!is.na(Volume)) + endtime<-dcast(tableR %>% filter(Volume < cutoff), `ID animal`+Group~., value.var = "Timepoint", fun.aggregate = function(x){max(as.numeric(as.character(x)))}) %>% rename("end"=".") + endtime["Dead"]<-dcast(tableR, `ID animal`+Group~., value.var = "Volume", fun.aggregate = function(x){max(as.numeric(as.character(x)))}) %>% pull(".") > input$cutoff + table_tumor<-endtime g<-ggsurvplot(survfit(Surv(table_tumor$end, table_tumor$Dead) ~ table_tumor$Group, data=table_tumor), pval = T, pval.method = T, # legend.labs = paste(c("< median", ">= median"), "MICA"),