Error3

invivos/app.R

@@ -539,15 +539,15 @@ server <- function(input, output) {
           g_surv_vacc<-g
           
         }else{
+          tableR<-table %>% filter(!is.na(Volume))
+          endtime<-dcast(tableR %>% filter(Volume < cutoff), `ID animal`+Group~., value.var = "Timepoint", fun.aggregate = function(x){max(as.numeric(as.character(x)))}) %>% rename("end"=".")
+          endtime["Dead"]<-dcast(tableR, `ID animal`+Group~., value.var = "Volume", fun.aggregate = function(x){max(as.numeric(as.character(x)))}) %>% pull(".") > input$cutoff
+          table_tumor<-endtime
           if (input$colors != ""){
             col<-input$colors
           }else{
             col<-gg_color_hue(length(unique(table_tumor$Group)))
           }
-          tableR<-table %>% filter(!is.na(Volume))
-          endtime<-dcast(tableR %>% filter(Volume < cutoff), `ID animal`+Group~., value.var = "Timepoint", fun.aggregate = function(x){max(as.numeric(as.character(x)))}) %>% rename("end"=".")
-          endtime["Dead"]<-dcast(tableR, `ID animal`+Group~., value.var = "Volume", fun.aggregate = function(x){max(as.numeric(as.character(x)))}) %>% pull(".") > input$cutoff
-          table_tumor<-endtime
           g<-ggsurvplot(survfit(Surv(table_tumor$end, table_tumor$Dead) ~ table_tumor$Group, data=table_tumor),
                         pval = T, pval.method = T,
                         # legend.labs = paste(c("< median", ">= median"), "MICA"),