diff --git a/invivos/app.R b/invivos/app.R index 26a5f0c..4b5836f 100755 --- a/invivos/app.R +++ b/invivos/app.R @@ -564,42 +564,42 @@ server <- function(input, output) { output$tab_stats<-renderTable({ stattest<-"dunn" oneside<-"" - if (!is.null(input$file_analy) & !is.null(analysis$taula_def)){ - table<-analysis$taula_def + if (!is.null(input$file_analy) & !is.null(analysis$taula)){ + table<-analysis$taula table_stats<-list() if (input$vacc == "No"){ table<-table%>%filter(!is.na(Volume)) if (length(unique(table$Volume)) > 1){ - table_stats<-multi_stats(table, "Volume", "Timepoint", "Group", stat.test=stattest) + table_stats<-multi_stats(table, "Volume", "DayPostInoc", "Group", stat.test=stattest) } table_kw<-as.data.frame(matrix(nrow=0, ncol=2)) - for (point in unique(table$Timepoint)){ - len_group<-length(unique(table %>% filter(Timepoint == point) %>% pull(Group))) + for (point in unique(table$DayPostInoc)){ + len_group<-length(unique(table %>% filter(DayPostInoc == point) %>% pull(Group))) if (len_group > 1){ - table_kw<-rbind(table_kw, data.frame(point,kruskal.test(table %>% filter(Timepoint == point) %>% pull(Volume), table %>% filter(Timepoint == point) %>% pull(Group))[3][[1]])) + table_kw<-rbind(table_kw, data.frame(point,kruskal.test(table %>% filter(DayPostInoc == point) %>% pull(Volume), table %>% filter(DayPostInoc == point) %>% pull(Group))[3][[1]])) } } - colnames(table_kw)<-c("Timepoint", "KW-p.val") + colnames(table_kw)<-c("DayPostInoc", "KW-p.val") table_stats<-merge(table_stats, table_kw) }else{ for (side in c("L","R")){ - tableR<-filter(table, `ID tumor` == side) %>% filter(!is.na(Volume)) + tableR<-filter(table, Side == side) %>% filter(!is.na(Volume)) if (length(unique(tableR$Volume)) > 1){ - table_stats[[side]]<-multi_stats(tableR, "Volume", "Timepoint", "Group", stat.test=stattest) + table_stats[[side]]<-multi_stats(tableR, "Volume", "DayPostInoc", "Group", stat.test=stattest) } table_kw<-as.data.frame(matrix(nrow=0, ncol=2)) - for (point in unique(tableR$Timepoint)){ - len_group<-length(unique(tableR %>% filter(Timepoint == point) %>% pull(Group))) + for (point in unique(tableR$DayPostInoc)){ + len_group<-length(unique(tableR %>% filter(DayPostInoc == point) %>% pull(Group))) if (len_group > 1){ - table_kw<-rbind(table_kw, data.frame(point,kruskal.test(tableR %>% filter(Timepoint == point) %>% pull(Volume), tableR %>% filter(Timepoint == point) %>% pull(Group))[3][[1]])) + table_kw<-rbind(table_kw, data.frame(point,kruskal.test(tableR %>% filter(DayPostInoc == point) %>% pull(Volume), tableR %>% filter(DayPostInoc == point) %>% pull(Group))[3][[1]])) } } - colnames(table_kw)<-c("Timepoint", "KW-p.val") + colnames(table_kw)<-c("DayPostInoc", "KW-p.val") table_stats[[side]]<-merge(table_stats[[side]], table_kw) } } - table_stats_def<-bind_rows(table_stats, .id = "ID tumor") + table_stats_def<-bind_rows(table_stats, .id = "Side") if (input$filter_stats == T){ table_stats_def %>% filter(p.adj < 0.05) }else{