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@ -439,6 +439,7 @@ server <- function(input, output) { |
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table %>% group_by(Group, DayPostInoc, Side) %>% count() %>% spread(DayPostInoc, n) |
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table %>% group_by(Group, DayPostInoc, Side) %>% count() %>% spread(DayPostInoc, n) |
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} |
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} |
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}) |
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}) |
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output$cin_group<-renderPlot({ |
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output$cin_group<-renderPlot({ |
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if (!is.null(input$file_analy) & !is.null(analysis$taula)){ |
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if (!is.null(input$file_analy) & !is.null(analysis$taula)){ |
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observeEvent(analysis$taula, {}) |
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observeEvent(analysis$taula, {}) |
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@ -469,7 +470,7 @@ server <- function(input, output) { |
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deadmice<-filter(table, !is.na(substr(Observations,1,1)) & substr(Observations,1,1) == "+") %>% |
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deadmice<-filter(table, !is.na(substr(Observations,1,1)) & substr(Observations,1,1) == "+") %>% |
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pull(Animal) |
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pull(Animal) |
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print(deadmice) |
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print(deadmice) |
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if (input$operated == TRUE){ |
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if (input$operated == TRUE & nrow(firstoper) > 0){ |
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for (i in 1:nrow(firstoper)){ |
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for (i in 1:nrow(firstoper)){ |
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table<-table %>% filter(DayPostInoc < firstoper$FirstOper[i] | Side != firstoper$Side[i]) |
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table<-table %>% filter(DayPostInoc < firstoper$FirstOper[i] | Side != firstoper$Side[i]) |
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} |
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} |
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@ -478,7 +479,7 @@ server <- function(input, output) { |
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table<-table %>% filter(!Animal %in% deadmice) |
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table<-table %>% filter(!Animal %in% deadmice) |
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} |
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} |
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} |
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} |
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ggplot(table, aes(DayPostInoc, Volume, color=Group, group=Group))+ |
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ggplot(table, aes(DayPostInoc, Volume, color=Group, group=Group))+ |
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geom_errorbar(stat="summary", width=0.05)+ |
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geom_errorbar(stat="summary", width=0.05)+ |
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geom_line(stat="summary")+ |
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geom_line(stat="summary")+ |
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@ -487,14 +488,14 @@ server <- function(input, output) { |
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labs(x="Days after tumor inoculation")+ |
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labs(x="Days after tumor inoculation")+ |
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scale_y_continuous(expand = expansion(mult = c(0,0.05)))+ |
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scale_y_continuous(expand = expansion(mult = c(0,0.05)))+ |
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scale_x_continuous(expand = expansion(mult = c(0,0.05)), limits = c(0, (round(max(table$DayPostInoc) / 5)+1)*5))+ |
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scale_x_continuous(expand = expansion(mult = c(0,0.05)), limits = c(0, (round(max(table$DayPostInoc) / 5)+1)*5))+ |
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theme_bw() |
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theme_bw() |
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}else{ |
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}else{ |
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firstoper<- filter(table, !is.na(substr(Observations,1,1)) & substr(Observations,1,1) == "*") %>% |
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firstoper<- filter(table, !is.na(substr(Observations,1,1)) & substr(Observations,1,1) == "*") %>% |
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pull(DayPostInoc) %>% min(na.rm = T) |
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pull(DayPostInoc) %>% min(na.rm = T) |
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print(firstoper) |
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print(firstoper) |
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if (input$operated == TRUE){ |
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if (input$operated == TRUE & nrow(firstoper) > 0){ |
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table<-table %>% filter(DayPostInoc < firstoper) |
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table<-table %>% filter(DayPostInoc < firstoper) |
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}else{ |
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}else{ |
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deadmice<-filter(table, !is.na(substr(Observations,1,1)) & substr(Observations,1,1) == "+") %>% |
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deadmice<-filter(table, !is.na(substr(Observations,1,1)) & substr(Observations,1,1) == "+") %>% |
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@ -542,7 +543,7 @@ server <- function(input, output) { |
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firstoper<- filter(table, !is.na(substr(Observations,1,1)) & substr(Observations,1,1) == "*") %>% |
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firstoper<- filter(table, !is.na(substr(Observations,1,1)) & substr(Observations,1,1) == "*") %>% |
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select(DayPostInoc, Side) %>% unique() %>% |
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select(DayPostInoc, Side) %>% unique() %>% |
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group_by(Side) %>% summarise(FirstOper=min(DayPostInoc)) |
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group_by(Side) %>% summarise(FirstOper=min(DayPostInoc)) |
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if (input$operated == TRUE){ |
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if (input$operated == TRUE & nrow(firstoper) > 0){ |
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for (i in 1:nrow(firstoper)){ |
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for (i in 1:nrow(firstoper)){ |
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table<-table %>% filter(DayPostInoc < firstoper$FirstOper[i] | Side != firstoper$Side[i]) |
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table<-table %>% filter(DayPostInoc < firstoper$FirstOper[i] | Side != firstoper$Side[i]) |
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} |
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} |
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@ -567,7 +568,7 @@ server <- function(input, output) { |
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pull(DayPostInoc) %>% min(na.rm = T) |
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pull(DayPostInoc) %>% min(na.rm = T) |
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print(firstoper) |
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print(firstoper) |
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if (input$operated == TRUE){ |
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if (input$operated == TRUE & nrow(firstoper) > 0){ |
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table<-table %>% filter(DayPostInoc < firstoper) |
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table<-table %>% filter(DayPostInoc < firstoper) |
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}else{ |
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}else{ |
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deadmice<-filter(table, !is.na(substr(Observations,1,1)) & substr(Observations,1,1) == "+") %>% |
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deadmice<-filter(table, !is.na(substr(Observations,1,1)) & substr(Observations,1,1) == "+") %>% |
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@ -598,7 +599,7 @@ server <- function(input, output) { |
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firstoper<- filter(table, !is.na(substr(Observations,1,1)) & substr(Observations,1,1) == "*") %>% |
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firstoper<- filter(table, !is.na(substr(Observations,1,1)) & substr(Observations,1,1) == "*") %>% |
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select(DayPostInoc, Side) %>% unique() %>% |
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select(DayPostInoc, Side) %>% unique() %>% |
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group_by(Side) %>% summarise(FirstOper=min(DayPostInoc)) |
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group_by(Side) %>% summarise(FirstOper=min(DayPostInoc)) |
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if (input$operated == TRUE){ |
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if (input$operated == TRUE & nrow(firstoper) > 0){ |
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for (i in 1:nrow(firstoper)){ |
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for (i in 1:nrow(firstoper)){ |
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table<-table %>% filter(DayPostInoc < firstoper$FirstOper[i] | Side != firstoper$Side[i]) |
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table<-table %>% filter(DayPostInoc < firstoper$FirstOper[i] | Side != firstoper$Side[i]) |
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} |
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} |
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@ -639,7 +640,7 @@ server <- function(input, output) { |
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pull(DayPostInoc) %>% min(na.rm = T) |
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pull(DayPostInoc) %>% min(na.rm = T) |
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print(firstoper) |
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print(firstoper) |
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if (input$operated == TRUE){ |
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if (input$operated == TRUE & nrow(firstoper) > 0){ |
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table<-table %>% filter(DayPostInoc < firstoper) |
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table<-table %>% filter(DayPostInoc < firstoper) |
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}else{ |
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}else{ |
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deadmice<-filter(table, !is.na(substr(Observations,1,1)) & substr(Observations,1,1) == "+") %>% |
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deadmice<-filter(table, !is.na(substr(Observations,1,1)) & substr(Observations,1,1) == "+") %>% |
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