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@ -167,13 +167,13 @@ sqlWriteTemp<-function(conn=dta, nhcs=nhc.test, file="queryOV.xlsx", samples.mod |
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if (today==TRUE){ |
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cnag.exp$FECHA_ENVIO<-format(Sys.Date(), "%d/%m/%y") |
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} |
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}else{cnag.exp<-NULL} |
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}else{cnag.exp<-sqlFetch(dta, "CNAG") %>% slice(0)} |
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if (any(sapply(nhc.table$Samples, function(x) "rna" %in% strsplit(x,",")[[1]]) == T)){ |
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nhcs.rna<-nhc.table[sapply(nhc.table$Samples, function(x) "rna" %in% strsplit(x,",")[[1]]),"NHC"] |
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umid.rna<-sqlFetch(conn, "UMID") %>% filter(NHC %in% nhcs.rna) %>% pull(UMID) |
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sample.rna<-samples.exp %>% filter(UMID %in% umid.rna) %>% pull(CODIGO) |
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rna.exp<-merge(data.frame("UMID"=umid.rna, "CODIGO"=sample.rna), sqlFetch(dta, "RNADNA") %>% slice(0), all=T) |
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}else{rna.exp<-NULL} |
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}else{rna.exp<- sqlFetch(dta, "RNADNA") %>% slice(0)} |
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if (clinics.mod){ |
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## Importar los datos clínicos de pacientes existentes y generar nueva entrada par los nuevos |
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upd.clinics<-sqlFetch(conn, "CLINICOS") |
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