Machacar plantilla.

sqlFunctions.R

@@ -167,13 +167,13 @@ sqlWriteTemp<-function(conn=dta, nhcs=nhc.test, file="queryOV.xlsx", samples.mod
       if (today==TRUE){
         cnag.exp$FECHA_ENVIO<-format(Sys.Date(), "%d/%m/%y")
       }
-    }else{cnag.exp<-NULL}
+    }else{cnag.exp<-sqlFetch(dta, "CNAG") %>% slice(0)}
     if (any(sapply(nhc.table$Samples, function(x) "rna" %in% strsplit(x,",")[[1]]) == T)){
       nhcs.rna<-nhc.table[sapply(nhc.table$Samples, function(x) "rna" %in% strsplit(x,",")[[1]]),"NHC"]
       umid.rna<-sqlFetch(conn, "UMID") %>% filter(NHC %in% nhcs.rna) %>% pull(UMID)
       sample.rna<-samples.exp %>% filter(UMID %in% umid.rna) %>% pull(CODIGO)
       rna.exp<-merge(data.frame("UMID"=umid.rna, "CODIGO"=sample.rna), sqlFetch(dta, "RNADNA") %>% slice(0), all=T)
-    }else{rna.exp<-NULL}
+    }else{rna.exp<- sqlFetch(dta, "RNADNA") %>% slice(0)}
     if (clinics.mod){
       ## Importar los datos clínicos de pacientes existentes y generar nueva entrada par los nuevos
       upd.clinics<-sqlFetch(conn, "CLINICOS")
@@ -184,7 +184,12 @@ sqlWriteTemp<-function(conn=dta, nhcs=nhc.test, file="queryOV.xlsx", samples.mod
     }
     
     ## Exportar tablas a la plantilla de entrada para su rellenado
-    wb <- loadWorkbook(file)
+    wb <- createWorkbook(file)
+    addWorksheet(wb, "NHC")
+    addWorksheet(wb, "samples")
+    addWorksheet(wb, "CLINICS")
+    addWorksheet(wb, "CNAG")
+    addWorksheet(wb, "RNADNA")
     writeData(wb, "NHC", merge(nhc.table, upd.umid, sort = F))
     if (samples.mod){writeData(wb,"samples",samples.exp)}
     if (clinics.mod){writeData(wb,"CLINICS",upd.clinics)}